Publications

• Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors , eLife (2025)
• Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors , eLife (2025)
• Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors , bioRxiv (Cold Spring Harbor Laboratory) (2024)
• Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability , PLoS ONE (2020)
• Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril , Molecular Biology and Evolution (2020)
• HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies , Molecular Biology and Evolution (2019)
• Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes , Molecular Biology and Evolution (2017)
• TRAINING THE NEXT GENERATION OF QUANTITATIVE BIOLOGISTS IN THE ERA OF BIG DATA , Biocomputing 2015 (2014)
• Heterogeneous Rates of Molecular Evolution Among Cryptic Species of the Ciliate Morphospecies Chilodonella uncinata , Journal of Molecular Evolution (2011)
• Benchmarking multi-rate codon models , PLoS One (2010)